PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G099500.1
Common NameB456_003G099500, LOC105788441
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 422aa    MW: 46259.6 Da    PI: 7.633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G099500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.4e-15228273555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRR+ri++++++L++l+P+a      K +Ka++L +++eY+k+Lq
  Gorai.003G099500.1 228 HNLSERRRRHRIKQKMNTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 273
                         9************************9.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-18221292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.212223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-18228292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-12228273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-15228277No hitNo description
SMARTSM003531.0E-16229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MSHCVAPNCW NLKHQSQEQV HFVEEEDNET NRSSHISNPM SNQEVAELTW QNGQLAFHGL  60
NRHLPTASSK PTWGISGDTL ESIVHQATCL HTQNHNFSLL QHDQNQTPAV VSSIAASSGS  120
SGRLPTAAVV KKRARSSSDV CGEIPRGGVG KEYASACASA SDAFCKENDD STMMTWASHL  180
SPQTMKAKAV DEDYAYQDGS ENQDEEQETR GETGRSQATR RSRASAIHNL SERRRRHRIK  240
QKMNTLQKLV PNASKTDKAS MLDEVIEYLK QLQTQVEMMS MRNMAAQMMM QQTRRQLQMS  300
ALARMGVGMG IGILDDNNSL APNPSPVTAP TRTFLPPPPP PPSFVTPPPM IPTRFAAAAQ  360
ANSDASSHGS IPSPDPYCTL LAQSMNMELY NNKMAAPYRP QINQTTQTSS NPSRSNNVAK  420
D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470806.10.0PREDICTED: transcription factor PIF7 isoform X2
TrEMBLA0A0D2QQZ70.0A0A0D2QQZ7_G
STRINGVIT_17s0000g06930.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-30bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]